# positions[].organizations[].parent[].label
School of Veterinary Medicine and Biomedical Sciences

# keywords[]
Stem Cell Research - Nonembryonic - Human

# keywords[]
3102 Bioinformatics And Computational Biology

# keywords[]
30 Agricultural, Veterinary And Food Sciences

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
Colitis Mango Mtor Pathway Pomegranate Rat

# keywords[]
Drug-Related Side Effects And Adverse Reactions

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
Cyclic Nucleotide Phosphodiesterases, Type 4

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
Major Classification Is Biological Sciences

# keywords[]
3.1 Primary Prevention Interventions To Modify Behaviours Or Promote Wellbeing

# keywords[]
3 Prevention Of Disease And Conditions, And Promotion Of Well-being

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Receptor, Transforming Growth Factor-beta Type I

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
1.1 Normal Biological Development And Functioning

# publications[].label
Influence of whole-wheat consumption on fecal microbial ecology of obese diabetic mice

# publications[].label
MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification.

# publications[].label
Chronic binge alcohol consumption during pregnancy alters rat maternal uterine artery pressure response.

# publications[].label
Classification of diet-modulated gene signatures at the colon cancer initiation and progression stages.

# publications[].label
Loss of Aryl Hydrocarbon Receptor Promotes Colon Tumorigenesis in ApcS580/+; KrasG12D/+ Mice.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
CONDITIONING-BASED MODEL FOR THE REGULATORY ACTIVITIES OF microRNAs IN SPECIFIC DIETARY CONTEXTS

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Colonic mucosal and exfoliome transcriptomic profiling and fecal microbiome response to a flaxseed lignan extract intervention in humans.

# publications[].label
Assessment of histone tail modifications and transcriptional profiling during colon cancer progression reveals a global decrease in H3K4me3 activity.

# publications[].label
A Framework for Comparison and Assessment of Synthetic RNA-Seq Data.

# publications[].label
A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.

# publications[].label
Inside front cover: Comparison of antiinflammatory mechanisms of mango (Mangifera Indica L.) and pomegranate (Punica Granatum L.) in a preclinical model of colitis

# publications[].label
State reduction for network intervention in probabilistic Boolean networks.

# publications[].label
A framework for grouping nanoparticles based on their measurable characteristics.

# publications[].label
Modeling the next generation sequencing sample processing pipeline for the purposes of classification.

# publications[].label
In silico predicted transcriptional regulatory control of steroidogenesis in spawning female fathead minnows (Pimephales promelas).

# publications[].label
Reduction mappings between Probabilistic Boolean networks

# publications[].label
0447 Microbial modulation of the neonatal immune system: Lessons from infants and piglets

# publications[].label
WHO/ILO work-related burden of disease and injury: Protocol for systematic reviews of occupational exposure to dusts and/or fibres and of the effect of occupational exposure to dusts and/or fibres on pneumoconiosis.

# publications[].label
The fecal microbiome in dogs with acute diarrhea and idiopathic inflammatory bowel disease.

# publications[].label
Investigation of the binding of dioxin selective pentapeptides to a polyaniline matrix.

# publications[].label
The PSA(-/lo) prostate cancer cell population harbors self-renewing long-term tumor-propagating cells that resist castration.

# publications[].label
Establishment of a multicomponent dietary bioactive human equivalent dose to delete damaged Lgr5+ stem cells using a mouse colon tumor initiation model.

# publications[].label
Model-based study of the Effectiveness of Reporting Lists of Small Feature Sets using RNA-Seq Data

# publications[].publisher
Association for Computing Machinery (ACM)

# publications[].label
Dynamics preserving size reduction mappings for probabilistic boolean networks

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Identification of genomic loci associated with Rhodococcus equi susceptibility in foals.

# publications[].label
Comparison of antiinflammatory mechanisms of mango (Mangifera indica L.) and pomegranate (Punica granatum L.) in DSSinduced colitis in rats (372.8)

# publications[].label
Structure of the dimerization domain of the rabies virus phosphoprotein.

# publications[].label
Comparison of anti-inflammatory mechanisms of mango (Mangifera Indica L.) and pomegranate (Punica Granatum L.) in a preclinical model of colitis.

# publications[].label
The non-invasive exfoliated transcriptome (exfoliome) reflects the tissue-level transcriptome in a mouse model of NSAID enteropathy.

# publications[].label
On the Distribution of Randomly Generated Boolean Networks as Models for Genetic Regulation

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
An Approach to the Characterization of Flexure Hinges for the Purpose of Optimizing the Design of a Micromanipulator

# publications[].label
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response

# publications[].label
Modeling genetic regulatory networks: Continuous or discrete?

# publications[].label
Exfoliated epithelial cell transcriptome reflects both small and large intestinal cell signatures in piglets.

# publications[].label
Comparative study of predictive computational models for nanoparticle-induced cytotoxicity.

# publications[].label
Whole-Wheat Supplemented Diet Changed Fecal Microbial Ecology of Obese Diabetic Mice

# publications[].label
Red raspberry decreases heart biomarkers of cardiac remodeling associated with oxidative and inflammatory stress in obese diabetic db/db mice.

# publications[].label
Quantum dots trigger immunomodulation of the NFB pathway in human skin cells.

# publications[].label
Dietary fat and fiber interact to uniquely modify global histone post-translational epigenetic programming in a rat colon cancer progression model.

# publications[].label
Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice.

# publications[].label
Non-invasive evaluation of the equine gastrointestinal mucosal transcriptome.

# publications[].label
Personalized Nutrition Using Microbial Metabolite Phenotype to Stratify Participants and Non-Invasive Host Exfoliomics Reveal the Effects of Flaxseed Lignan Supplementation in a Placebo-Controlled Crossover Trial.

# publications[].label
The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data.

# publications[].label
Integrated microRNA and mRNA expression profiling in a rat colon carcinogenesis model: effect of a chemo-protective diet.

# publications[].label
Linear discrete operators on the disk algebra

# publications[].label
Generating Boolean networks with a prescribed attractor structure.

# publications[].label
Quantifying the notions of canalizing and master genes in a gene regulatory network-a Boolean network modeling perspective.

# publications[].label
Comparative Study of Synthetic Bulk RNA-Seq Generators

# publications[].label
Noninvasive molecular fingerprinting of host-microbiome interactions in neonates.

# publications[].label
Feature selection for high-dimensional integrated data

# publications[].publisher
Society for Industrial & Applied Mathematics (SIAM)

# publications[].label
Antitumor potential of dark sweet cherry sweet (Prunus avium) phenolics in suppressing xenograft tumor growth of MDA-MB-453 breast cancer cells.

# publications[].label
Dietary fish oil and curcumin combine to modulate colonic cytokinetics and gene expression in dextran sodium sulphate-treated mice.

# publications[].label
Modular organization of rabies virus phosphoprotein.

# publications[].label
n-3 Polyunsaturated fatty acids modulate carcinogen-directed non-coding microRNA signatures in rat colon.

# publications[].label
Differences in the genome, methylome, and transcriptome do not differentiate isolates of Streptococcus equi subsp. equi from horses with acute clinical signs from isolates of inapparent carriers.

# publications[].label
Epigenetic Mechanisms by Which Chemoprotective Natural Compounds Promote RXR/FXR Signaling and Reduce Colon Cancer Progression

# publications[].label
A four-compartment compartmental model to assess net whole body protein breakdown using a pulse of phenylalanine and tyrosine stable isotopes in humans.

# publications[].label
Complexity of the BN and the PBN Models of GRNs and Mappings for Complexity Reduction

# publications[].label
Synthesizing Boolean networks with a given attractor structure

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Fecal microbiota composition of breast-fed infants is correlated with human milk oligosaccharides consumed.

# publications[].label
Effects of high-fat diet and intestinal aryl hydrocarbon receptor deletion on colon carcinogenesis.

# publications[].label
Selection Policy-Induced Reduction Mappings for Boolean Networks

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Identifying mechanistic similarities in drug responses.

# publications[].label
Reducing the complexity of a PBN while preserving its dynamical structure

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Expression of bovine genes associated with local and systemic immune response to infestation with the Lone Star tick, Amblyomma americanum.

# publications[].label
Bayesian Classification of Microbial Communities Based on 16S rRNA Metagenomic Data

# publications[].label
Role of SP transcription factors in hormone-dependent modulation of genes in MCF-7 breast cancer cells: microarray and RNA interference studies.

# publications[].label
Applying Reduction Mappings in Designing Genomic Regulatory Networks

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Chemopreventive Potential of DSC Anthocyanins and Total Phenolics Extracted from Dark Sweet Cherry (DSC) Through Modulation of MDA-MB-453 Breast Tumor Proteomic Profile

# publications[].label
Comparative effects of diet and carcinogen on microRNA expression in the stem cell niche of the mouse colonic crypt.

# publications[].label
Aryl Hydrocarbon Receptor (AhR) Signaling in Colonic Cells and Tumors

# publications[].label
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

# publications[].label
PATHWAY REGULATORY ANALYSIS IN THE CONTEXT OF BAYESIAN NETWORKS USING THE COEFFICIENT OF DETERMINATION

# publications[].label
Comparison of analgesic efficacy and fetal effects between transdermal administration of fentanyl and intramuscular administration of buprenorphine in pregnant sheep.

# publications[].publisher
American Veterinary Medical Association (AVMA)

# publications[].label
Comparison of Four Classification Methods on Small-Sample-Size Synthetic RNA-seq Data

# publications[].label
EZH2 and Endometrial Cancer Development: Insights from a Mouse Model.

# publications[].label
Noninvasive stool-based detection of infant gastrointestinal development using gene expression profiles from exfoliated epithelial cells.

# publications[].label
Optimal control of gene regulatory networks with uncertain intervention effects

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Influence of whole-wheat consumption on fecal microbial ecology of obese diabetic mice

# publications[].label
An integrated in vivo and in silico analysis of the metabolism disrupting effects of CPI-613 on embryo-larval zebrafish (Danio rerio).

# publications[].label
Single-nucleus transcriptomics of epicardial adipose tissue from females reveals exercise control of innate and adaptive immune cells.

# publications[].label
Assessing the Multivariate Relationship between the Human Infant Intestinal Exfoliated Cell Transcriptome (Exfoliome) and Microbiome in Response to Diet.

# publications[].label
Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing.

# publications[].label
REDUCTION MAPPINGS AND CONTROL POLICIES FOR INTERVENTION IN BOOLEAN NETWORKS

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
WHO/ILO work-related burden of disease and injury: Protocol for systematic reviews of occupational exposure to solar ultraviolet radiation and of the effect of occupational exposure to solar ultraviolet radiation on melanoma and non-melanoma skin cancer.

# publications[].label
PCAN: Probabilistic correlation analysis of two non-normal data sets.

# publications[].label
Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Bidirectional relationships and attractor structure of Boolean networks

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Fecal microbiome and metabolites differ between breast and formula-fed human infants

# publications[].label
A CoD-based stationary control policy for intervening in large gene regulatory networks.

# publications[].label
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.

# publications[].label
Design of the Building Research in CRC prevention (BRIDGE-CRC) trial: a 6-month, parallel group Mediterranean diet and weight loss randomized controlled lifestyle intervention targeting the bile acid-gut microbiome axis to reduce colorectal cancer risk among African American/Black adults with obesity.

# publications[].label
Bayesian Multivariate Poisson Model for RNA-Seq Classification

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Gene and microRNA expression in p53-deficient day 8.5 mouse embryos.

# publications[].label
Hostmicrobe interactions in neonatal intestinal development. Role of early nutrition

# publications[].label
Constrained Reduction Mapping for a Class of Network Models of Genomic Regulation

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Noninvasive detection of candidate molecular biomarkers in subjects with a history of insulin resistance and colorectal adenomas.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Defining two populations of prostate cancer cells with distinct molecular, biological, and tumor-propagating properties

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
WHO/ILO work-related burden of disease and injury: Protocol for systematic reviews of occupational exposure to solar ultraviolet radiation and of the effect of occupational exposure to solar ultraviolet radiation on cataract.

# publications[].label
Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification.

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Intervention in gene regulatory networks via greedy control policies based on long-run behavior.

# publications[].label
Age-related changes following in vitro stimulation with Rhodococcus equi of peripheral blood leukocytes from neonatal foals.

# publications[].label
Integrated microRNA and mRNA expression profiling in a rat colon carcinogenesis model: Effect of a chemoprotective diet

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Grouping of Colloidal Metal Nanoparticles Based on Their Measurable Characteristics: A Proposed Framework

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Extinction scenarios in evolutionary processes: a multinomial Wright-Fisher approach.

# publications[].label
Transcriptomic Profiling of Gene Expression Associated with Granulosa Cell Tumor Development in a Mouse Model.

# publications[].label
REDUCTION COST FOR BOOLEAN NETWORKS WITH PERTURBATION

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Transforming growth factor beta signaling and decidual integrity in mice.

# publications[].label
Identification of actively translated mRNA transcripts in a rat model of early-stage colon carcinogenesis.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Enhancer of Zeste 2 Polycomb Repressive Complex 2 Subunit Is Required for Uterine Epithelial Integrity.

# publications[].label
Loss of aryl hydrocarbon receptor potentiates FoxM1 signaling to enhance self-renewal of colonic stem and progenitor cells.

# publications[].label
Comprehensive site-specific whole genome profiling of stromal and epithelial colonic gene signatures in human sigmoid colon and rectal tissue.

# publications[].label
WHO/ILO work-related burden of disease and injury: Protocol for systematic reviews of exposure to occupational ergonomic risk factors and of the effect of exposure to occupational ergonomic risk factors on osteoarthritis of hip or knee and selected other musculoskeletal diseases.

# publications[].label
Boolean models of genomic regulatory networks: reduction mappings, inference, and external control.

# publications[].label
A COD BASED REDUCTION ALGORITHM FOR BOOLEAN AND PROBABILISTIC BOOLEAN NETWORKS

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Inference of Boolean networks under constraint on bidirectional gene relationships.

# publications[].publisher
Institution of Engineering and Technology (IET)

# publications[].label
Data describing the effects of dietary bioactive agents on colonic stem cell microRNA and mRNA expression.

# publications[].label
Network Classification Based on Reducibility With Respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - A Boolean Network Modeling Perspective.

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# publications[].label
Genome-wide analysis of the rat colon reveals proximal-distal differences in histone modifications and proto-oncogene expression.

# publications[].label
Non-invasive stool-based detection of newborn infant gastrointestinal development using gene expression profiles derived from exfoliated epithelial cells

# publications[].label
Pathway Analysis in the Context of Bayesian Networks  Mathematical Modeling of Master and Canalizing Genes

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

# editorOf[].label
Emerging Research in the Analysis and Modeling of Gene Regulatory Networks

# researcherOn[].label
Role of Aryl Hydrocarbon Receptor in Microbiota-Colon Stem Cell Interactions

# researcherOn[].awardedBy.label
National Institute of Environmental Health Sciences - (Durham, North Carolina, United States)

# researcherOn[].awardedBy.preferredLabel
DHHS-NIH-National Institute of Environmental Health Sciences

# researcherOn[].label
Diet-dependent regulation of DCIS progression

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Center for Translational Environmental Health Research

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
A novel mouse model of testicular granulosa cell tumors

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Systemic oxylipin signals (SOS) for herbivory-induced defense

# researcherOn[].awardedBy.label
United States Department of Agriculture - (Washington D.C., District of Columbia, United States)

# researcherOn[].awardedBy.preferredLabel
USDA-National Institute of Food And Agriculture

# researcherOn[].label
TGF-BETA Signaling in Endometrial Cell Function and Dysfunction

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].awardedBy.preferredLabel
DHHS-NIH-Eunice Kennedy Shriver National Institute of Child Health & Human Development

# researcherOn[].label
Chemoprotective Effects of Natural Products on Colonic Adult Stem Cells

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Texas A&M Center for Environmental Health Research

# researcherOn[].awardedBy.label
National Institute of Environmental Health Sciences - (Durham, North Carolina, United States)

# researcherOn[].awardedBy.preferredLabel
DHHS-NIH-National Institute of Environmental Health Sciences

# streetAddress
Texas A&M University; Vet Med - Physiology & Pharmacology; 4466 TAMU

# schools[]
School of Veterinary Medicine and Biomedical Sciences

# etdChairOf[].label
Knight, Jason Matthew (2015-05). Optimal Model-Based Approaches for Predictive Inference in Biology. Doctoral Dissertation.

# etdChairOf[].label
Zhao, Chen (2012-07). Stochastic Modeling and Analysis of Pathway Regulation and Dynamics. Doctoral Dissertation.