# positions[].organizations[].parent[].label
College of Agriculture and Life Sciences

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
3102 Bioinformatics And Computational Biology

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
3214 Pharmacology And Pharmaceutical Sciences

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Matrix Attachment Region Binding Proteins

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
Intracellular Signaling Peptides And Proteins

# keywords[]
5 Development Of Treatments And Therapeutic Interventions

# keywords[]
Dohad (developmental Origins Of Health And Disease)

# keywords[]
3102 Bioinformatics And Computational Biology

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
Stem Cell Research - Nonembryonic - Human

# keywords[]
5 Development Of Treatments And Therapeutic Interventions

# keywords[]
3201 Cardiovascular Medicine And Haematology

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Expression And Methylation Quantitative Trait Loci

# keywords[]
3102 Bioinformatics And Computational Biology

# keywords[]
5 Development Of Treatments And Therapeutic Interventions

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
5 Development Of Treatments And Therapeutic Interventions

# keywords[]
Stem Cell Research - Nonembryonic - Non-human

# keywords[]
1.1 Normal Biological Development And Functioning

# keywords[]
Reverse Transcriptase Polymerase Chain Reaction

# keywords[]
Preterm, Low Birth Weight And Health Of The Newborn

# keywords[]
Perinatal Period - Conditions Originating In Perinatal Period

# keywords[]
3102 Bioinformatics And Computational Biology

# keywords[]
Clustered Regularly Interspaced Short Palindromic Repeats

# keywords[]
3 Prevention Of Disease And Conditions, And Promotion Of Well-being

# keywords[]
1.1 Normal Biological Development And Functioning

# educationAndTraining[].organization.label
Yeshiva University - (New York, New York, United States)

# publications[].label
Genomic insights into host and parasite interactions during intracellular infection by Toxoplasma gondii.

# publications[].label
Mosaic chromosomal aneuploidy detection by sequencing (MAD-seq)

# publications[].label
Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis.

# publications[].label
Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis.

# publications[].publisher
American Association for the Advancement of Science (AAAS)

# publications[].label
Epigenomic Profiling of Myeloproliferative Diseases Reveal Idiopathic Myelofibrosis as An Epigenetically Distinct Subgroup and Highlights the Epigenetic Effects of Jak2V617F Mutation

# publications[].label
Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells.

# publications[].label
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.

# publications[].label
High-efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells using a single-stranded donor oligonucleotide strategy.

# publications[].label
Epigenetic silencing of the circadian clock gene CRY1 is associated with an indolent clinical course in chronic lymphocytic leukemia.

# publications[].label
Notch Pathway Is Activated via Genetic and Epigenetic Alterations and Is a Therapeutic Target in Clear Cell Renal Cancer.

# publications[].label
Bronchial Field Basal Cells Show Methylome-Wide Characteristics Reflective of Smoking

# publications[].label
Genome-wide and locus-specific DNA hypomethylation in G9a deficient mouse embryonic stem cells.

# publications[].label
Cell Type-Specific Chromatin Accessibility Analysis in the Mouse and Human Brain

# publications[].label
Early-life stress and ovarian hormones alter transcriptional regulation in the nucleus accumbens resulting in sex-specific responses to cocaine

# publications[].label
Lsh regulates LTR retrotransposon repression independently of Dnmt3b function.

# publications[].label
Optimized design and data analysis of tag-based cytosine methylation assays.

# publications[].label
Mechanisms of establishment and functional significance of DNA demethylation during erythroid differentiation.

# publications[].label
Coupling A Methylome And Transcriptome Survey Of Human Lung Cancer

# publications[].label
Maternal gametic transmission of translocations or inversions of human chromosome 11p15.5 results in regional DNA hypermethylation and downregulation of CDKN1C expression.

# publications[].label
The identification and properties of chitin-binding protein b01 (CBPb01).

# publications[].label
Correction: Widespread Hypomethylation Occurs Early and Synergizes with Gene Amplification during Esophageal Carcinogenesis

# publications[].label
Intrauterine Hyperglycemia Is Associated with an Impaired Postnatal Response to Oxidative Damage.

# publications[].label
Egr1 is a sex-specific regulator of neuronal chromatin, synaptic plasticity, and behaviour.

# publications[].label
Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status

# publications[].label
DNA demethylation by 5-aza-2'-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences.

# publications[].label
Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma.

# publications[].label
Disproportionate Vitamin A Deficiency in Women of Specific Ethnicities Linked to Differences in Allele Frequencies of Vitamin A-Related Polymorphisms.

# publications[].label
Disproportionate vitamin A deficiency in pregnant women of specific ethnicities in the United States and ethnic differences in allele frequencies of polymorphisms of vitamin A-related genes

# publications[].label
Regulation of the ovine interferon-tau gene by a blastocyst-specific transcription factor, Cdx2.

# publications[].label
Whole Methylome Explorations Of Paired Lung Tumor And Non-Tumor Clinical Samples

# publications[].label
Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome.

# publications[].label
Interleukin 2 modulates thymic-derived regulatory T cell epigenetic landscape.

# publications[].label
The Role of Egr1 in Driving Ventral Hippocampal Gene Expression Patterns Underlying Sex Hormone-Dependent Changes in Anxiety-Like Behavior Within Females

# publications[].label
The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease.

# publications[].label
Mosaic Epigenetic Dysregulation of Ectodermal Cells in Autism Spectrum Disorder

# publications[].label
Contribution of Trp63CreERT2-labeled cells to alveolar regeneration is independent of tuft cells.

# publications[].label
DNA methylation is developmentally regulated for genes essential for cardiogenesis.

# publications[].label
Cell type-specific methylation profiles occurring disproportionately in CpG-less regions that delineate developmental similarity.

# publications[].label
Myeloma is characterized by stage-specific alterations in DNA methylation that occur early during myelomagenesis.

# publications[].publisher
The American Association of Immunologists

# publications[].label
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.

# publications[].label
Whole methylome explorations of paired tumor and non-tumor clinical samples using HELP

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice.

# publications[].label
Association of genetic variation with disproportionate vitamin A deficiency in pregnant women of certain ethnicities in the United States.

# publications[].label
Comparative isoschizomer profiling of cytosine methylation: the HELP assay.

# publications[].label
A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.

# publications[].label
Aberrant Activation of DNA Methyltransferase 1 (DNMT1) Mediated Global DNA Methylation and Implicates Sox/Wnt/(a)over-cap-Catenin Signaling Pathway in the Multiple Endocrine Neoplasm Type 1 (MEN1) Syndrome

# publications[].label
Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

# publications[].label
Fetal-Not Maternal-APOL1 Genotype Associated with Risk for Preeclampsia in Those with African Ancestry.

# publications[].label
Genome Wide Methylome Alterations in Lung Cancer.

# publications[].label
The SEQC2 epigenomics quality control (EpiQC) study.

# publications[].label
Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation.

# publications[].label
High efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells

# publications[].label
Epigenetic characterization of the CpG islands of bovine Leptin and POU5F1 genes in cloned bovine fetuses.

# publications[].label
An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide conjugated antibodies

# publications[].label
Methylome profiling reveals distinct alterations in phenotypic and mutational subgroups of myeloproliferative neoplasms.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Prenatal vitamin D deficiency exposure leads to long-term changes in immune cell proportions.

# publications[].label
Functional genetic variants can mediate their regulatory effects through alteration of transcription factor binding.

# publications[].label
Epigenomic Profiling of Myeloproliferative Diseases Reveal Idiopathic Myelofibrosis as An Epigenetically Distinct Subgroup and Highlights the Epigenetic Effects of Jak2V617F Mutation

# publications[].label
Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes.

# publications[].label
Prenatal vitamin D deficiency alters immune cell proportions of young adult offspring through alteration of long-term stem cell fates.

# publications[].label
Neuronal Chromatin Dynamics and Anxiety-Related Phenotypes Across the Estrous Cycle

# publications[].label
Cellular expression of gut chitinase mRNA in the gastrointestinal tract of mice and chickens.

# publications[].label
DNA methylation profiling using HpaII tiny fragment enrichment by ligation-mediated PCR (HELP).

# publications[].label
Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells.

# publications[].label
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.

# publications[].label
Abstract A38: Whole methylome explorations of paired lung tumor and non-tumor clinical samples

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status of the Donor

# publications[].label
Cell type-specific chromatin accessibility analysis in the mouse and human brain.

# publications[].label
High resolution methylome analysis reveals widespread functional hypomethylation during adult human erythropoiesis.

# publications[].label
Differential epigenome-wide DNA methylation patterns in childhood obesity-associated asthma.

# publications[].label
BK polyomavirus from patients with tissue-derived prostate adenocarcinoma

# publications[].label
P58.02 Bronchial Field Progenitor Basal Cells Show Methylome-Wide Characteristics Reflective of Lung Cancer Case-Control, Age, and Smoking Status

# publications[].label
Senescence reversion contributes to acquired drug resistance

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse.

# publications[].label
Regulation of conceptus adhesion by endometrial CXC chemokines during the implantation period in sheep.

# publications[].label
Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways.

# publications[].label
Vitamin D Deficiency During Development Permanently Alters Liver Cell Composition and Function.

# publications[].label
Ascorbic acid-induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma.

# publications[].publisher
American Society for Clinical Investigation

# publications[].label
Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome.

# publications[].label
Whole Genome Bisulphite Sequencing Using the Illumina Hiseq X System

# publications[].label
Airway basal cells show regionally distinct potential to undergo metaplastic differentiation.

# publications[].label
2011 - ENGINEERING A HEMATOPOIETIC STEM CELL NICHE BY REVITALIZING MESENCHYMAL STEM CELLS

# publications[].label
Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways.

# publications[].label
The Einstein Genome Gateway using WASP - a high throughput multi-layered life sciences portal for XSEDE.

# publications[].label
Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence.

# publications[].publisher
American Association for the Advancement of Science (AAAS)

# publications[].label
Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus.

# publications[].label
Genome-wide DNA methylation analysis using massively parallel sequencing technologies.

# publications[].label
Methylation in embryonic stem cells in vitro.

# publications[].label
Aberrant epigenetic and genetic marks are seen in myelodysplastic leukocytes and reveal Dock4 as a candidate pathogenic gene on chromosome 7q.

# publications[].label
Establishment of trophoblast stem cell lines from somatic cell nuclear-transferred embryos.

# publications[].publisher
Proceedings of the National Academy of Sciences

# publications[].label
A cellular stress response induced by the CRISPR/dCas9 activation system is not heritable through cell divisions

# publications[].label
Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq.

# publications[].label
Chromatin organization in the female mouse brain fluctuates across the oestrous cycle.

# publications[].label
Genome-Wide Methylome Alterations in Lung Cancer

# publications[].label
Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder.

# publications[].label
Epigenetic changes in B lymphocytes associated with house dust mite allergic asthma.

# publications[].label
Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis.

# publications[].label
Premature differentiation of nephron progenitor cell and dysregulation of gene pathways critical to kidney development in a model of preterm birth.

# publications[].label
A novel serum chitinase that is expressed in bovine liver.

# publications[].label
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data

# publications[].label
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data

# publications[].label
The Wasp System: an open source environment for managing and analyzing genomic data.

# publications[].label
Loss of the MLL3 tumor suppressor accelerates breast tumor onset via HIF1-induced CCL2-mediated recruitment of CCR2+ regulatory T cells

# publications[].label
Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.

# publications[].label
DNA methylation profiles of donor nuclei cells and tissues of cloned bovine fetuses.

# publications[].label
Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice.

# publications[].label
Engineering a Hematopoietic Stem Cell Niche By Revitalizing Mesenchymal Stem Cells with Five Transcription Factors

# publications[].label
Quantitative changes in serum concentration of bovine gut chitinase in Theileria infection.

# publications[].label
DNA methylation changes in murine breast adenocarcinomas allow the identification of candidate genes for human breast carcinogenesis.

# publications[].label
Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data.

# publications[].label
Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification.

# publications[].label
Kidney cancer is characterized by aberrant methylation of tissue-specific enhancers that are prognostic for overall survival.

# publications[].publisher
American Association for Cancer Research (AACR)

# publications[].label
Dynamic Chromatin Remodeling and Sex-Specific Risk for Anxiety and Depression

# publications[].label
Premature differentiation of nephron progenitors and dysregulation of gene pathways critical to kidney development in a model of preterm birth

# publications[].label
Automated computational analysis of genome-wide DNA methylation profiling data from HELP-tagging assays.

# publications[].label
Intragenomic Redistribution of Host Transcription Factor Binding With Toxoplasma Gondii Infection

# publications[].label
Prominin 1 and Notch regulate ciliary length and dynamics in multiciliated cells of the airway epithelium.

# publications[].label
Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era.

# publications[].label
A Cellular Stress Response Induced by the CRISPR-dCas9 Activation System Is Not Heritable Through Cell Divisions.

# publications[].label
METHYLATION EVENTS IN LUNG CANCER: WHOLE GENOME EXPLORATIONS OF PAIRED TUMOR AND NON-TUMOR CLINICAL SAMPLES

# publications[].label
Differential Epigenome-Wide Dna Methylation Patterns In Childhood Obesity-Associated Asthma

# publications[].label
Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocysts.

# publications[].label
Genetic background contributions to the disproportion of vitamin A deficiency in pregnant women of certain ethnicities in populations of the United States.

# publications[].label
High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.

# publications[].label
Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development.

# publications[].label
Cellular Expression of the Gut Chitinase in the Stomach of Frogs Xenopuslaevis and Rana catesbeiana

# publications[].label
Whole-genome bisulfite sequencing with improved accuracy and cost.

# publications[].label
Genetic Variations of Vitamin A-Absorption and Storage-Related Genes, and Their Potential Contribution to Vitamin A Deficiency Risks Among Different Ethnic Groups.

# researcherOn[].label
Epigenetic regulation of brain and behavior by the estrous cycle

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Enhancing pathogen-specific memory CD8+ T cell responses in vivo

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Cell specific Partitioning Defective Par1a/b deletion effects on renal repair

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# researcherOn[].label
Impact of Prenatal vitamin A deficiency on cell fate alterations in adult airway hyperresponsiveness

# researcherOn[].awardedBy.label
National Institutes of Health - (Bethesda, Maryland, United States)

# organizations[]
College of Agriculture and Life Sciences

# schools[]
College of Agriculture and Life Sciences

# inTheNews[].label
Department of Nutrition adds genetics expert, trained veterinarian to faculty