# positions[].organizations[].label
College of Agriculture and Life Sciences

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3102 Bioinformatics And Computational Biology

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Target Region Amplification Polymorphism (trap)

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Cyclic Electron Flow Around Photosystem I

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1.1 Normal Biological Development And Functioning

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30 Agricultural, Veterinary And Food Sciences

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a. Thaliana

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3102 Bioinformatics And Computational Biology

# publications[].label
Re-conceptualizing the In Vitro Production Pipeline

# publications[].label
Evidence for pre-climacteric activation of AOX transcription during cold-induced conditioning to ripen in European pear (Pyrus communis L.).

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Transcriptome Analysis Reveals Potential Mechanisms for Ethylene-Inducible Pedicel-Fruit Abscission Zone Activation in Non-Climacteric Sweet Cherry (Prunus avium L.).

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Comparative genomics analysis in Prunoideae to identify biologically relevant polymorphisms.

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Beyond Ethylene: New Insights Regarding the Role of Alternative Oxidase in the Respiratory Climacteric.

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Engineering Herbicide Resistance Pathways in Plastids

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Chloroplast genetic engineering to improve agronomic traits.

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UV-C light inactivation kinetics of Penicillium expansum on pear surfaces: Influence on physicochemical and sensory quality during storage

# publications[].label
Biochar - A Panacea for Agriculture or Just Carbon?

# publications[].label
Understanding the Diversity of Fruit Plastids

# publications[].label
Evidence for pre-climacteric activation of AOX transcription during cold-induced conditioning to ripen in European pear (Pyrus communis L.)

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Regulation of plastid gene expression in rice involves calcium and protein phosphatases/kinases for signal transduction

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Green light control of plant form and function

# publications[].label
Characterization of ethylene-inducible pedicel-fruit abscission zone formation in non-climacteric sweet cherry (Prunus avium L.)

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PHYLOGENETIC ANALYSIS OF THE PLASTID INVERTED REPEAT FOR 244 SPECIES: INSIGHTS INTO DEEPER-LEVEL ANGIOSPERM RELATIONSHIPS FROM A LONG, SLOWLY EVOLVING SEQUENCE REGION

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The apple genome - harbinger of innovation for sustainable apple production

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Genome editing reagent delivery in plants.

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Structure and Genome Organization of Cherry Virus A (Capillovirus, Betaflexiviridae) from China Using Small RNA Sequencing.

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Fruit crops in the era of genome editing: closing the regulatory gap.

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Tobacco: A Model Plant for Understanding the Mechanism of Abiotic Stress Tolerance

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Evaluation of multiple approaches to identify genome-wide polymorphisms in closely related genotypes of sweet cherry (Prunus avium L.).

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Comparative Transcriptome Analysis of Emerging Young and Mature Leaves of Bienertia sinuspersici, a Single-Cell C4 Plant

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The role of conventional plant breeding in ensuring safe levels of naturally occurring toxins in food crops

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Changes in ascorbate and associated gene expression during development and storage of potato tubers (Solanum tuberosum L.)

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Identification of Fusarium solani f. sp. pisi (Fsp) responsive genes in Pisum sativum

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The genome of the domesticated apple (Malus  domestica Borkh.).

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Detection of SNP and validation of a SFP InDel (deletion) in inverted repeat region of the Prunus species chloroplast genome

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Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence.

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Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing.

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A Total Systems Approach to Developing a Sustainable, Stem-Free Sweet Cherry Production, Processing and Marketing System

# publications[].publisher
International Society for Horticultural Science (ISHS)

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Genome editing in fruit, ornamental, and industrial crops.

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Identification of Root Rot Resistance QTLs in Pea Using Fusarium solani f. sp. pisi-Responsive Differentially Expressed Genes.

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Impact of heat stress, water stress, and their combined effects on the metabolism and transcriptome of grape berries.

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Development of a highly efficient Axiom 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization.

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Map-based Cloning of Single Gene Traits and Quantitative Traits

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Application of Cydia pomonella expressed sequence tags: Identification and expression of three general odorant binding proteins in codling moth.

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Evaluation of pea accessions and commercial cultivars for fusarium root rot resistance

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Native Pathways to Science, Technology, Engineering, and Math Graduate Degrees

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Variability in Fruit Yield and Quality of Genetically Diverse Tomato Cultivars in Response to Different Biochars

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Transcriptomic Analysis of Developing Merlot Berries (Vitis vinifera) Exposed to Smoke Treatment Reveals Genes and Pathways Underlying Undesirable 'Smoke Taint' Attributes

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Comparison of bacterial communities from inside and outside of Rhizoctonia bare patches in wheat

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Nanopore sequencing data and structural variants identified in Prunus avium seedlings derived through mutagenesis.

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Rapid and accurate pyrosequencing of angiosperm plastid genomes.

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Glyoxylic acid overcomes 1-MCP-induced blockage of fruit ripening in Pyrus communis L. var. 'D'Anjou'.

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Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection.

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Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I.

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Understanding the Molecular Basis of Fusarium solani Mediated Root Rot in Pisum sativum.

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Comparative analysis of virus-specific small RNA profiles of three biologically distinct strains of Potato virus Y

# publications[].label
The NAC transcription factor ATAF2 promotes ethylene biosynthesis and response in Arabidopsis thaliana seedlings.

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Mechanism of Regulation of Gene Expression for Chloroplast Proteins

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Methods of analysis of chloroplast genomes of C3, Kranz type C4 and Single Cell C4 photosynthetic members of Chenopodiaceae.

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Rootstock scion somatogenetic interactions in perennial composite plants.

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Chloroplast genetic engineering via organogenesis or somatic embryogenesis.

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Evaluation of CRISPR-associated Nucleases for the Efficiency of Gene Editing Using a Transient Protoplast-based Expression System

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Rosaceaous Genome Sequencing: Perspectives and Progress

# publications[].label
Glyoxylic acid overcomes 1-MCP-induced blockage of fruit ripening in Pyrus communis L. var. DAnjou

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Understanding the Diversity of Plastids in Fruits

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Identification of QTL Underlying Powdery Mildew and Bacterial Canker Infection in Sweet Cherry (Prunus avium L.)

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Comparative ultrastructure of fruit plastids in three genetically diverse genotypes of apple (Malusdomestica Borkh.) during development.

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(267) A Rapid Transformation System for Octoploid Strawberry

# publications[].publisher
American Society For Horticultural Science

# publications[].label
Limitations to photosynthesis by proton motive force-induced photosystem II photodamage.

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In vitro cultures and regeneration of Bienertia sinuspersici (Chenopodiaceae) under increasing concentrations of sodium chloride and carbon dioxide.

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Plastid transit peptides-where do they come from and where do they all belong? Multi-genome and pan-genomic assessment of chloroplast transit peptide evolution.

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CisSERS: Customizable In Silico Sequence Evaluation for Restriction Sites.

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Understanding Root Rot Disease in Agricultural Crops

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The Role of Light-Dark Regulation of the Chloroplast ATP Synthase.

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Antisense expression of peach mildew resistance locus O (PpMlo1) gene confers cross-species resistance to powdery mildew in Fragaria x ananassa.

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An Arabidopsis mutant with high cyclic electron flow around photosystem I (hcef) involving the NADPH dehydrogenase complex.

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Involvement of G-proteins, calmodulin and tagetitoxin-sensitive RNA polymerase in light-regulated expression of plastid genes (psbA, psaA and rbcL) in rice (Oryza sativa L.)

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Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants

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Identification of Fusarium solani f. sp. pisi (Fsp) Responsive Genes in Pisum sativum.

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Neuropeptides and peptide hormones identified in codling moth, Cydia pomonella (Lepidoptera: Tortricidae).

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Genetic diversity and relatedness of sweet cherry (prunus avium L.) cultivars based on single nucleotide polymorphic markers.

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Identification of QTLs Associated with Powdery Mildew Resistance in Sweet Cherry

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Population structure and genetic diversity of Bromus tectorum within the small grain production region of the Pacific Northwest.

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DNAjig: A New Approach for Building DNA Nanostructures

# publications[].publisher
Institute of Electrical and Electronics Engineers (IEEE)

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Resolving an ancient, rapid radiation in Saxifragales.

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Inactivation of Escherichia coli Population on Fruit Surfaces Using Ultraviolet-C Light: Influence of Fruit Surface Characteristics

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Green light adjusts the plastid transcriptome during early photomorphogenic development.

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Development and Evaluation of an AxiomTM 60K SNP Array for Almond (Prunus dulcis).

# publications[].label
Identification of water use efficiency related genes in 'Garnem' almond-peach rootstock using time-course transcriptome analysis.

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Concomitant phytonutrient and transcriptome analysis of mature fruit and leaf tissues of tomato (Solanum lycopersicum L. cv. Oregon Spring) grown using organic and conventional fertilizer.

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Draft genome data of Prunus avium cv 'Stella'.

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Characterization of LF9, an octoploid strawberry genotype selected for rapid regeneration and transformation.

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Stable transformation of the cotton plastid genome and maternal inheritance of transgenes.

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Biochar-A Panacea for Agriculture or Just Carbon?

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Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes.

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Bacterial Communities on Wheat Grown Under Long-Term Conventional Tillage and No-Till in the Pacific Northwest of the United States

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ASAP: amplification, sequencing & annotation of plastomes.

# publications[].label
Identification of root rot resistance QTLs in pea using Fusarium solani f. sp. pisi-responsive differentially expressed genes

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Evidence for the Involvement of Vernalization-related Genes in the Regulation of Cold-induced Ripening in DAnjou and Bartlett Pear Fruit

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Evidence for the Involvement of Vernalization-related Genes in the Regulation of Cold-induced Ripening in 'D'Anjou' and 'Bartlett' Pear Fruit.

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Identification of QTL Underlying Soluble Solids Content and Titratable Acidity in Sweet Cherry (Prunus avium L.)

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A Transcript Accounting from Diverse Tissues of a Cultivated Strawberry

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Effect of phyllotactic position and cultural treatments toward successful direct shoot organogenesis in dwarf 'Pixie' grapevine (Vitis vinifera L.)

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Assessing consumers' preferences and willingness to pay for novel sliced packed fresh pears: A latent class approach.

# publications[].label
Organ-specific gene expression and genetic transformation for improving rice

# publications[].label
Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants.

# publications[].label
Understanding Root Rot Disease in Agricultural Crops

# publications[].label
Transformation of strawberry: The basis for translational genomics in Rosaceae

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Genome sequences of Photorhabdus luminescens strains isolated from entomopathogenic nematodes from southern India.

# publications[].label
Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.

# publications[].label
Transcriptomic Analysis of Ethylene-inducible Pedicel-fruit Abscission Zone Formation in Sweet Cherry (Prunus avium L.)

# publications[].label
Challenges and opportunities in pear breeding

# publications[].label
Enhanced translation of a chloroplast-expressed RbcS gene restores small subunit levels and photosynthesis in nuclear RbcS antisense plants.

# publications[].publisher
Proceedings of the National Academy of Sciences

# publications[].label
Beyond Ethylene - AOX-mediated Fruit Ripening

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Multigene engineering: dawn of an exciting new era in biotechnology.

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Keep the DNA rolling: Multiple Displacement Amplification of archival plant DNA extracts

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CRISPR-associated nucleases: the Dawn of a new age of efficient crop improvement.

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Identification of Differentially Expressed Genes between "Honeycrisp" and "Golden Delicious" Apple Fruit Tissues Reveal Candidates for Crop Improvement

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PHYLOGENY OF THE CARYOPHYLLALES SENSU LATO: REVISITING HYPOTHESES ON POLLINATION BIOLOGY AND PERIANTH DIFFERENTIATION IN THE CORE CARYOPHYLLALES

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Transgenic and genome-edited fruits: background, constraints, benefits, and commercial opportunities.

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Transcriptome datasets from leaves and fruits of the sweet cherry cultivars 'Bing', 'Lapins' and 'Rainier'.

# publications[].label
Chloroplast Genetic Engineering Via Organogenesis or Somatic Embryogenesis

# publications[].label
Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance.

# publications[].label
Ultraviolet-C light inactivation of Penicillium expansum on fruit surfaces

# publications[].label
Beyond Ethylene: New Insights Regarding the Role of AOX in the Respiratory Climacteric

# publications[].label
Understanding protein import in diverse non-green plastids.

# publications[].label
Role of bacterial communities in the natural suppression of Rhizoctonia solani bare patch disease of wheat (Triticum aestivum L.).

# publications[].label
Involvement of phytochrome(s), Ca2+ and phosphorylation in light-dependent control of transcript levels for plastid genes (psbA, psaA and rbcL) in rice (Oryza sativa)

# publications[].label
Concomitant phytonutrient and transcriptome analysis of mature fruit and leaf tissues of tomato (Solanum lycopersicum L. cv. Oregon Spring) grown using organic and conventional fertilizer

# publications[].label
Methods of analysis of Chloroplast Genomes of C3, Kranz type C4 and Single Cell C4 photosynthetic members of Chenopodiaceae

# publications[].label
Comparative Chloroplast Genomics of C3, Kranz type C4 and Single Cell C4 photosynthetic members of Chenopodiaceae

# publications[].label
Manipulating Fruit Genomes - Discovery to Application

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Thioredoxin-insensitive plastid ATP synthase that performs moonlighting functions.

# publications[].publisher
Proceedings of the National Academy of Sciences

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Spectrometric techniques for elemental profile analysis associated with bitter pit in apples

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Comparative analysis of virus-specific small RNA profiles of three biologically distinct strains of Potato virus Y in infected potato (Solanum tuberosum) cv. Russet Burbank.

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Chloroplast Genome Data of Tecticornia indica, a Hygrohalophytic C4 Plant Species

# organizations[]
College of Agriculture and Life Sciences