First name,Last name,Preferred title,Overview,Position,Department,Individual
Bruce,Riley,Professor,"My lab studies inner ear development in zebrafish. A prominent feature of our research is to investigate how cell-cell signaling and downstream gene-interactions control development. One project in the lab focuses on how cell signaling regulates ectodermal patterning during gastrulation to establish the otic placode, the precursor of the inner ear. Our recent work shows that localized Fgf signaling is especially critical for inducing formation of the otic placode, and members of the Pax2/5/8 family of transcription factors are important mediators of Fgf signaling. During later stages of inner ear development, we are exploring how sensory hair cells and neurons are regulated. Our studies address how these cells initially form, how they are genetically maintained, and how they become specialized for hearing vs. balance. We are also investigating how zebrafish can replace dead and damaged hair cells, an ability that mammals have lost. The inability to regenerate hair cells explains why humans show progressive irreversible hearing loss as we age. It is hoped that activating or augmenting human homologs of genes shown to operate in zebrafish might help restore hearing and balance in humans.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n0dbb8253
Ira,Greenbaum,Professor,"The research in this laboratory is focused around questions concerning chromosomal rearrangement and it role(s) in vertebrate evolution. Although this usually involves assessments of intraspecific (populational) chromosomal polymorphism, the data are generally applicable to systematic interpretations and considerable attention is paid to the phylogenetic relationships and higher taxonomic patterns of chromosomal evolution. The systematic relationships of the species studied are typically used to establish the experimental design of the hypotheses tested. Our assessments of karyotypic rearrangement and chromosomal homology involve analyses of non-differentially stained and specifically- banded metaphase chromosomes. Although deer mice (Peromyscus) are our primary model, recent projects have also addressed cytogenetic questions in birds and reptiles. The laboratory contains complete facilities for light microscopy and imaging, tissue culturing and allozymic analyses.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n0fb98800
Rodolfo,Aramayo,Associate Professor,"My current research primarily focuses on understanding the organization, distribution, and comparison of information in Biological Systems. Our work encompasses two key levels of investigation:
Molecular Genetics: We employ the filamentous fungus Neurospora crassa as a model organism to uncover and comprehend the intricate molecular components responsible for sequence-based comparisons between homologous chromosomes, leading to the initiation of Meiotic Silencing, a phenomenon driven by RNA-mediated processes. Currently, our primary focus centers on the exploration of whether genes recognized for their significance in Meiotic Transvection/Silencing also contribute to the occurrence of Repeat Induced Point Mutation (RIP) phenomena.
Computational Analysis: We are developing novel computational pipelines dedicated to detecting sequence variations within related genomes. We are particularly intrigued by the prospect of simplifying (i.e., digitizing) the information present in DNA, RNA, and Proteins so as to simplify its manipulation and analysis. We think that digitizing emerging genomic data will not only enable us to use this data effectively but also to integrate it into Artificial Intelligence, Data Clustering, and Image Recognition Algorithms, in ways not done before. We posit that this process of converting biological features into digital equivalents has the potential to simplify genomic information, making it easier to uncover previously unnoticed patterns through complex computational comparisons. This approach has already yielded promising results by revealing unexpected informational patterns across various organisms' chromosomes. We believe that it will streamline and enhance our ability to comprehend different cellular and organismal states. Moreover, it holds significant promise in revolutionizing our understanding of diseases, particularly Cancer and Metagenomics. This informational perspective also contributes to our comprehension of genome evolution, especially in the field of comparative genomics and microbial metagenomics.",Associate Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n14287b36
Benjamin,Neuman,Professor,,Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n193ea580
Lathrop,Taylor,Instructional Assistant Professor,,Instructional Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n2d320178
Kira,Delmore,Assistant Professor,"We study the processes of adaptation and speciation using hybrid zones and variation within single species. These systems are ideal for studying evolutionary processes; they allow us to concentrate on the early stages of speciation and work in natural contexts. Our work focuses specifically on the phenotypic and genetic basis of adaptation and speciation and is aided by recent advances in several fields. For example, we are very interested in the role differences in seasonal migration play in speciation and the genetic basis of this behaviour syndrome. Advances in animal movement ecology and genomic are allowing answer questions we never thought possible. Much of our work focuses on single systems but wherever possible we expand out into larger comparative work using data from museum specimens and sequence archives.",Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n3c3b0dde
Charles,Criscione,Professor,"I examine fundamental ecological and evolutionary questions in parasite systems and consider my research to be at the interface of ecology, evolution, and genetics. Parasitology provides a rich subject area for studies of ecology and evolutionary biology. Numerous topics such as ecosystem dynamics, mating systems, or coevolution can be addressed because parasites are extremely diverse. By diversity, I include not only the myriad of taxa that have independently evolved a parasitic lifestyle, but also the diversity in life cycles, modes of reproduction, host species, and ecosystems utilized by parasites. This diversity also allows for comparative studies to address theories or unifying principles that span ecosystems or taxonomic groups. Furthermore, there are many practical applications such as studying the evolution of drug resistance, or using parasite community structure to assess ""ecosystem health"". My research interests address both basic and applied questions, and span three overlapping subject areas: 1) Evolution: Population Genetics, Mating Systems, and Molecular Epidemiology, 2) Ecology: Biodiversity, Conservation, and Natural History, and 3) Genetics and Ecological Genomics.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n41a8b584
Mary,Wicksten,Professor,"I am studying the Thoridae, a family of small-sized marine shrimp that are remarkably diverse in the cold waters of the North Pacific. Evidence suggests that these shrimp may be losing range due to global warming. They may be replaced by members of a different family, the Palaemonidae, a group of more aggressive predatory shrimp. But to study such a replacement, one must identify the shrimp. The last major study was in 1906. All previous work has been morphological. Evidence from my own work and that of Greg Jensen, University of Washington, suggests that not only have species been confused (one species is actually two, three species actually are only one) but the generic designation may depend on temperature-dependent features. With a small start-up grant from the Arctic Biodiversity Study, I am collaborating with Luis Hurtado,, Department of Wildlife and Fisheries Science, to obtain some molecular data on genetic affinities within the Thoridae and potentially allied shrimp taxa. These data may at least indicate which of the supposed genera are distinct or even if the Thoridae is indeed a natural group. Examination of the 150 or more presumed species will begin following an assessment of the genera.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n48bee4d6
Luis,Garcia,Professor,"I am interested in understanding how behavioral states are regulated at the molecular and genetic level. My lab addresses this complex question in the well-studied nematode Caenorhabditis elegans. Several physical aspects of this worm make it convenient for integrating whole organism system biology studies with genetic/molecular analysis of neurobiology and behavior. C. elegans is an anatomically simple organism; it is 1mm in size, and it contains ~ 1000 somatic cells, a third of which are neurons. The worm is also transparent, and thus every cell can be visualized by light microscopy. Behavioral mutants can be efficiently generated through standard chemical mutagenesis. In addition, gene functions involved in motivational and behavioral regulation can be determined by transgenic techniques.
My lab investigates the interplay between feeding and sex-specific mating behavior to understand how chemo/mechano-sensory and motor outputs are controlled under various physiological conditions. We study male mating by using genetics to de-construct this behavior into its fundamental sensory-motor components. We then use a combination of transgenics, pharmacology, classical genetics and laser microsurgery to understand how individual motor sub-behaviors are coordinated to produce gross behaviors during periods when the animal is food deprived, and when it is food satiated.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n4cd2f794
Joseph,Bernardo,Research Associate Professor,"I am an Integrative Evolutionary Ecologist, meaning that my research addresses a range of fundamental questions in Ecology and Evolutionary Biology from a multi-disciplinary, integrative perspective and using a diverse array of tools including field experiments, phylogenetically-rooted comparative statistical analyses, quantitative estimates of physiological performance, experimental analyses of reproductive behavior, and molecular genetics. I often work at the nexus of typically disparate fields of study, for example combining genetic, phylogenetic, physiological and macroecological perspectives in a single analysis of distribution and dispersal (Bernardo et al. 2007). Because multiple causality is inherent in understanding ecological and evolutionary problems, my research emphasizes a strong inference approach that therefore relies on both large datasets and multivariate statistical models to evaluate competing hypotheses. Most of my active work involves vertebrates and insects and other major invertebrate groups.
General areas of interest include: o determinants of range size and position o biodiversity conservation in the face of climate change o detection, and ecological and conservation implications of cryptic speciation and diversity o vertebrate ecology and life history o biology of amphibians and reptiles, especially salamanders and lizards o speciation and evolution of reproductive isolation o evolutionary ecology of body size including its role in species packing and community assembly o clinal variation in life history and physiological traits o comparative animal physiology and physiological ecology especially as they relate to life history variation and range occupation (macrophysiology) o life history evolution o evolution and implications of maternal effects, especially propagule size o experimental ecology",Research Associate Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n5787076f
Christine,Merlin,Associate Professor,"Our research broadly lies in understanding how organisms respond and adapt to changing environments, with an emphasis on circadian biology. Organisms from bacteria to humans use circadian clocks to control a plethora of biochemical, physiological and behavioral rhythms. These clocks are synchronized to daily and seasonal environmental changes to allow organisms to tune specific activities at the appropriate times of day or year.
In our laboratory, we use the eastern North American migratory monarch butterfly (Danaus plexippus) as a model system to study animal clock mechanisms and the role of circadian clocks and clock genes in a fascinating biological output, the animal long-distance migration. Every fall, like clockwork, millions of monarch butterflies start migrating thousands of miles from North America to reach their overwintering sites in central Mexico. During their journey south, migrating monarchs use a time-compensated sun compass orientation mechanism to maintain a constant flight bearing. Circadian clocks located in the antennae provide the critical internal timing device for compensation of the sun movement across the sky over the course of the day. The recent sequencing of the monarch genome and the establishment of genetic tools to knockout clock genes (and others) in vivo using nuclease-mediated gene targeting approaches provides us with a unique opportunity to uncover the molecular and cellular underpinnings of the butterfly clockwork, its migratory behavior and their interplay.",Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n5a23a5d7
Asha,Rao,Instructional Professor,,Assistant Department Head for Academic Affairs,Biology,https://scholars.library.tamu.edu/vivo/display/n631e24a7
Heath,Blackmon,Associate Professor,,Assistant Professor||Associate Professor,Biology||Biology,https://scholars.library.tamu.edu/vivo/display/n6e56235d
Terry,Thomas,Professor,"My interests are evolutionarily broad and include animals, plants and fungi. A major focus of the lab is the genomic analysis of gene expression programs during plant gene expression programs, particularly during embryogenesis and seed development, and the underlying regulatory mechanisms required for the initiation and maintenance of these programs. This work has illustrated the combinatorial interactions of cis and trans -acting factors that result in specific gene regulatory events. We are also using genomics tools to study the interaction of the rice blast fungus, Magnaporthe grisea , with plant hosts; the circadian control of gene expression; and the development of the vertebrate retina. An additional focal area is the utilization of molecular and cellular approaches for crop improvement. As part of these research activities, we have developed or adapted high throughput genomics approaches to accelerate the gene discovery process and subsequent analysis of gene expression and function.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n79201ac5
Alex,Keene,Professor and Department Head,,Professor and Department Head,Biology,https://scholars.library.tamu.edu/vivo/display/n8650c3cf
Shogo,Sato,Assistant Professor,"Dr. Sato has a broad research background in circadian biology combined with growing knowledge in biochemistry, epigenetics, and metabolism. Especially during his second postdoctoral career in the laboratory of the late Paolo Sassone-Corsi at UCI, he has been tackling the question of how the circadian clock links to metabolic functions. Dr. Sato demonstrated the circadian control of metabolic pathways is reprogramed by aging, which is rescued by caloric restriction (Sato et al., Cell 2017). More recently, Dr. Sato investigated the time-dependent impact of exercise, revealing exercise at the early active phase (fasted phase) exerts robust metabolic responses in skeletal muscle (Sato et al., Cell Metab 2019) and illustrating the atlas of exercise metabolism unique to different exercise timing (Sato et al., Cell under revision). Lastly, Dr. Sato discovered a novel non-canonical role played by the circadian clock specific to pluripotent stem cells (Sato et al., in preparation). Taken together, his past/ongoing studies contribute to the accumulation of evidence underscoring a healthy lifestyle relied on biological clocks.
The goals of Sato lab will be to 1) achieve a fundamental understanding of the intertwined link between metabolism, epigenetics, and the circadian clock, and 2) establish translational interventions targeting the circadian clock system to promote human health by using molecular, biochemical, physiological, and bioinformatics approaches.",Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n9dce7c6b
Amanda,Adams,Adjunct Faculty,,Adjunct Faculty||Senior Lecturer,Biology||College of Arts and Sciences,https://scholars.library.tamu.edu/vivo/display/nad7c1e41
Mark,Zoran,Professor and Associate Dean,"Cellular and Developmental Neurobiology
Research Summary My laboratory studies cellular mechanisms governing the formation of specific synaptic connections between neurons and their targets. These mechanisms include cell-cell recognition and target-dependent induction of the presynaptic secretion machinery. Some of our studies investigate synapse formation of identified motoneurons of the American pond snail, Helisoma trivolvis , following nerve injury in vivo and in cell culture. Since the synapse is the site of most interneuronal communication within the nervous system, an understanding of the development, regeneration and plasticity of these connections is crucial to an ultimate appreciation of neural integration and brain function.
Neural Morphallaxis
We also study a rare form of regeneration called neural morphallaxis in the annelid worm, Lumbriculus variegatus. This organism is ideal for examining behavioral, physiological, cellular and molecular mechanisms of development, regeneration and systems-level plasticity. We have defined the neural correlates of escape reflexes, which are reconfigured during morphallaxis. Recently we have begun investigations of synaptic molecules up-regulated specifically during morphallaxis. This model system is emerging as a valuable educational tool in the science classroom.",Acting Associate Provost for Graduate & Professional Studies||Professor,Biology||Office of the Provost and Executive Vice President,https://scholars.library.tamu.edu/vivo/display/nb36a8003
Mahul,Chakraborty,Assistant Professor,,Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nd1041b0d
Leslie,Winemiller,Senior Lecturer,,Senior Lecturer,Biology,https://scholars.library.tamu.edu/vivo/display/ndfcdb36f
Darrell,Pilling,Research Assistant Professor,,Research Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/ne8a9ecc1
Tapasree,Roy Sarkar,Assistant Professor,"The dynamic interaction of cancer cells with the tumor microenvironment (TME) is crucial to stimulate the heterogeneity of cancer cells, and to increase multidrug resistance ending in cancer cell progression and metastasis. Understanding the underlying molecular & cellular mechanisms governing these interactions can be used as a novel strategy to disrupt cancer cell-TME interaction and contribute to the development of efficient therapeutic strategies. By integrating cutting-edge cellular and molecular biology, bioinformatics, and bioengineering approaches, our lab is investigating the complexity of TME.",Assistant Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nf08a1119
Paul,Hardin,Distinguished Professor,"A diverse array of organisms including prokaryotic and eukaryotic microbes, plants, and animals display daily rhythms in physiology, metabolism and/or behavior. These rhythms are not passively driven by environmental cycles of light and temperature, but are actively controlled by endogenous circadian clocks that are set by environmental cycles, keep time in the absence of environmental cues, and activate overt physiological, metabolic and behavioral rhythms at the appropriate time of day. This remarkable conservation of circadian clock function through evolution suggests that maintaining synchrony with the environment is of fundamental importance. Our understanding of the circadian clock is particularly important for human health and well-being. The clearest examples of circadian clock dysfunction are those that result in abnormal sleep-wake cycles, but clock disturbances are also associated with other ailments including epilepsy, cerebrovascular disease, depression, and seasonal affective disorder. The realization that disorders of the sleep-wake cycle such as Familial Advanced Sleep Phase Syndrome can result from alterations in clock gene function underscores the clinical importance of understanding the molecular organization of the circadian system.
Work in my laboratory focuses on defining the molecular mechanisms that drive circadian clock function in the fruit fly, Drosophila melanogaster. We previously found that the core timekeeping mechanism is based on core and interlocked transcriptional feedback loops. Our studies currently focus on (1) defining post-translational regulatory mechanisms that operate in the core loop to set the 24 hour period, (2) determining whether interlocked loops are important for circadian timekeeping and/or output, (3) understanding how circadian oscillator cells are determined during development, and (4) defining mechanisms that control rhythms in olfactory and gustatory physiology and behavior.",Distinguished Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nf27056c4
Richard,Gomer,Distinguished Professor,"Our laboratory is working on three areas of biomedicine, trying to move observations from basic research into the clinic. First, we are studying how the sizes of tissues and tumors are regulated, and how this can be manipulated for therapeutic purposes. As a model system, we are using the simple eukaryote Dictyostelium discoideum, which allows us to combine techniques such as biochemistry, genetics, computer modeling, and cell biology to study tissue size regulation. We have found that a secreted protein as well as the unusual molecule polyphosphate are signals in negative feedback loops that inhibit Dictyostelium cell proliferation, and we are studying the signal transduction pathway to understand similar mechanisms in humans.
Second, we are studying how some secreted proteins can make cells move away from the source of the signal. We found such a signal (called a chemorepellent) in Dictyostelium, and then found a similar signal in humans. We are working to understand the signal transduction pathway for both. The human signal repels neutrophils, and we found that this can be used therapeutically in mouse models of neutrophil-driven diseases such as rheumatoid arthritis and acute respiratory distress syndrome.
Third, we have found that a human blood protein called Serum Amyloid P (SAP) regulates a key step in the formation of scar tissue as well as the formation of the scar-like lesions in fibrosing diseases such as congestive heart failure and pulmonary fibrosis. We are studying this mechanism, and a biotech company (Promedior, now sold to Roche) we co-founded is testing SAP as a therapy for fibrosis in patients in a Phase 3 trials.",Distinguished Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nf41f3898
James,Erickson,Associate Professor,"Alternative developmental fates are often determined by small differences in the concentrations of signaling molecules. In many cases, cells respond to these signals within narrowly defined temporal windows and are unresponsive to the same signal molecules at other times in development. A number of aspects of Drosophila sex determination make it an ideal experimental system to study how strict temporal controls and small quantitative differences in protein concentration can elicit different developmental fates.",Associate Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nf4575bc8
Uel,Mcmahan,Professor,"McMahan and his research group provide one of the cornerstones for Texas A&M's new Interdisciplinary Life Sciences Building and its related teaching and research efforts. His work focuses on how the nervous system's synapses form in the embryo and function in the adult in various animal species. It relies on high-resolution imaging, chemical characterization and experimental manipulation of specific macromolecules and organelles, which altogether provide insights unobtainable via any other approach. The findings bear directly on the problems of understanding the molecular basis of human brain diseases and restoring brain function after trauma.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nfc3672e7