First name,Last name,Preferred title,Overview,Position,Department,Individual
Sing-Hoi,Sze,Associate Professor - Term Appoint,"Our work focuses on the application of computational techniques to solve problems in biology. Current research projects cover diverse areas in computational biology, including multiple sequence alignment, motif finding with applications to predicting transcription factor binding sites, biological network analysis, and identification of gene clusters within genomes.",Associate Professor - Term Appoint,Computer Science and Engineering,https://scholars.library.tamu.edu/vivo/display/n0248d9df
James,Womack,Distinguished Professor,"Comparative mammalian genomics with emphasis on bovids and laboratory animals. Study of evolution of gene families and genomic variation underlying disease resistance. Investigation of genetic mechanisms in innate immunity with focus on livestock, select agents, and agricultural biosecurity.",Distinguished Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n0e1a49e2
Timothy,Devarenne,Associate Professor,"We study the biochemical and molecular mechanisms underlying the control of programmed cell death (PCD) in plants and how PCD is manipulated during plant-pathogen interactions. Specifically we study the interaction between tomato and Pseudomonas syringae pv. tomato (Pst) the causative agent of bacterial spot disease. Resistance to this disease is conferred by the host Pto serine/threonine protein kinase which recognizes Pst strains expressing the type III effector protein AvrPto.
PCD is induced during both resistant and susceptible plant-pathogen interactions. In the case of a resistant interaction, PCD induced by the plant, known as the hypersensitive response (HR), and acts to limit the spread of the pathogen. In susceptible plant-pathogen interactions plant PCD is induced by the pathogen after infection leading to death of the host. Studies have indicated that the genes controlling host PCD during the HR are the same genes that are manipulated by the pathogen during susceptible interactions. The difference lies in the timing of controlling the activity of these genes; HR PCD occurs within 12 hours of pathogen recognition while pathogen-induced PCD occurs several days after infection.
Many of these genes that control plant PCD are serine/threonine (S/T) protein kinase. We are interested in studying a specific class of S/T protein kinases that control PCD in plants called AGC kinases and how they are regulated in both resistant and susceptible plant-pathogen interactions. Additionally, when plants are not attacked by pathogens, PCD is a process that requires constant control so that cell death does not occur. We are looking at the signaling mechanisms and pathways employed to keep PCD under check in non-pathogen challenged plants.",Faculty Affiliate||Associate Professor,Energy Institute||Biochemistry and Biophysics,https://scholars.library.tamu.edu/vivo/display/n11411275
Rodolfo,Aramayo,Associate Professor,"My current research primarily focuses on understanding the organization, distribution, and comparison of information in Biological Systems. Our work encompasses two key levels of investigation:
Molecular Genetics: We employ the filamentous fungus Neurospora crassa as a model organism to uncover and comprehend the intricate molecular components responsible for sequence-based comparisons between homologous chromosomes, leading to the initiation of Meiotic Silencing, a phenomenon driven by RNA-mediated processes. Currently, our primary focus centers on the exploration of whether genes recognized for their significance in Meiotic Transvection/Silencing also contribute to the occurrence of Repeat Induced Point Mutation (RIP) phenomena.
Computational Analysis: We are developing novel computational pipelines dedicated to detecting sequence variations within related genomes. We are particularly intrigued by the prospect of simplifying (i.e., digitizing) the information present in DNA, RNA, and Proteins so as to simplify its manipulation and analysis. We think that digitizing emerging genomic data will not only enable us to use this data effectively but also to integrate it into Artificial Intelligence, Data Clustering, and Image Recognition Algorithms, in ways not done before. We posit that this process of converting biological features into digital equivalents has the potential to simplify genomic information, making it easier to uncover previously unnoticed patterns through complex computational comparisons. This approach has already yielded promising results by revealing unexpected informational patterns across various organisms' chromosomes. We believe that it will streamline and enhance our ability to comprehend different cellular and organismal states. Moreover, it holds significant promise in revolutionizing our understanding of diseases, particularly Cancer and Metagenomics. This informational perspective also contributes to our comprehension of genome evolution, especially in the field of comparative genomics and microbial metagenomics.",Associate Professor,Biology,https://scholars.library.tamu.edu/vivo/display/n14287b36
Elizabeth,Pierson,Professor,"Dr. Pierson's areas of research include plant-microbe interactions, biological control, and sustainable agriculture. She also conducts research related to zebra chip disease of potato, microbe-insect interactions, and terrestrial plant ecology. She teaches the undergraduate course Garden Science and the graduate course Plant-associated Microorganisms, which is available to students in three different graduate programs. Dr. Pierson is active in graduate education, currently serving as a member of the Horticultural Sciences Graduate Program Committee and the MEPS admissions committee and as the advisor for the Horticulture Graduate Council. She also serves as a chair or member of graduate research committees and provides undergraduate laboratory research experience.",Professor||Adjunct Professor,Plant Pathology and Microbiology||Horticultural Sciences,https://scholars.library.tamu.edu/vivo/display/n1757e534
Blanca,Lupiani,Professor,"Research in my laboratory focuses on better understanding the molecular mechanisms of pathogenesis of Marek's disease virus, a chicken oncogenic alphaherpesvirus. We study gene function using biochemical techniques and by introducing mutations into the viral genome. The knowledge obtained from these studies is used to develop vaccines to control this critical poultry pathogen. In addition, we are investigating the use of Marek's disease vaccines as viral vectors to control other viral diseases of poultry.",Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n255741f6
Sanjay,Reddy,Professor,"The long-term goal of my laboratory is to understand the molecular basis of pathogenesis of Marek's disease virus (MDV), a potent oncogenic herpesvirus that causes T-cell tumors in chickens. MDV codes for a protein (Meq), which shares significant resemblance with the Jun/Fos family of transcriptional factors. We have shown that this gene plays a critical role in latency and transformation of T-lymphocytes. Understanding the basic mechanism of viral pathogenesis will aid in the development of improved vaccine. We are also interested in other important poultry disease like avian influenza.",Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n28054661
Thomas,Ioerger,Professor - Term Appoint,"Dr. Ioerger's research interests are in the areas of Artificial Intelligence, Intelligent Agents, and Machine Learning. His work has covered diverse areas, from spatial reasoning, to simulating team-work, to modeling emotions. Currently, his primary focus is on designing multi-agent system architectures to simulate collaborative behavior and teamwork. He also applies AI and machine learning methods to various problems in the area of Bioinformatics, including the improvement of protein sequence alignments, molecular modeling, and X-ray crystallography. The latter research has lead to the development of an automated software system for protein model-building called TEXTAL, which is currently being used by crystallographers throughout the world.",Professor - Term Appoint,Computer Science and Engineering,https://scholars.library.tamu.edu/vivo/display/n36a51a43
Leland,Pierson,Professor and Head,,Professor and Head,Plant Pathology and Microbiology,https://scholars.library.tamu.edu/vivo/display/n4162e884
Sarah,Capik,Assistant Professor,"Dr. Capik's research interests include the characterization, transmission dynamics, diagnosis, and control of Bovine Respiratory Disease (BRD). She has investigated potential methods to mitigate stress in cattle, used behavioral monitoring to identify sick cattle, and evaluated diagnostic sampling strategies for BRD.",Assistant Professor||Assistant Professor,School of Veterinary Medicine and Biomedical Sciences||Texas A&M AgriLife Research,https://scholars.library.tamu.edu/vivo/display/n551442f5
Scott,Dindot,Associate Professor,,Associate Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n5a986b57
Linglin,Xie,Associate Professor,,Assistant Professor,Nutrition,https://scholars.library.tamu.edu/vivo/display/n5aa6a1af
Jason,Gill,Associate Professor,"Dr. Gill's major research focus is the biology and application of the viruses of bacteria, called bacteriophages or simply phages. Phages are the most abundant organisms on Earth, and they are found ubiquitously in water, soil, and as part of the microbial flora of animals and plants. As natural predators of bacteria, phages are attractive agents for the control of pathogenic bacteria in humans, animals, and foods. The increasing prevalence of antibiotic resistance in pathogenic bacteria, and the desire to curtail use of antibiotics in animal agriculture, has sparked interest in the use of phages as antimicrobials. Research in Dr. Gill's lab encompasses phage genomics, basic phage biology and the applications of phages in real-world settings.",Associate Professor,Animal Science,https://scholars.library.tamu.edu/vivo/display/n6277ae7f
Helene,Andrews-Polymenis,Professor,"Salmonella is a leading cause of food borne illness, causing an estimated 1.4 million cases per year in the United States. Serovar Typhimurium is responsible for about 26% of these cases (CDC, 1998). The vast majority of Salmonella infections in mammals and birds are the result of infection with S. enterica subspecies I serovars, yet very few genetic factors that are necessary for intestinal persistence in these reservoirs have been described. Intestinal persistence is critical for shedding and transmission of serovar Typhimurium in mammals and birds, yet this phenomenon and interaction of the organism with the host immune system during persistent infection is poorly understood. The long-term goal of our work is to understand the genetic basis of persistence and host range restriction of Salmonella enterica serovar Typhimurium in its mammalian hosts.",Professor,Microbial Pathogenesis and Immunology,https://scholars.library.tamu.edu/vivo/display/n663cc5f1
Guan,Zhu,Professor,"Our laboratory conducts translational research with an ultimate goal to discover new anti-parasitic therapeutics by targeting metabolic enzymes and other molecules critical or essential to the parasite infection, survival and development, such as those involved in the lipid and energy metabolisms and interacting with host cells in Cryptosporidium and other protozoan parasites. Other research areas include functional genomics and molecular evolution of apicomplexan parasites, and parasitic diseases important to the conservation of wild animals.",Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n6d62f33b
Leslie,Adams,Senior Professor,"My research is focused on the: 1) investigation of the comparative molecular pathogenesis of zoonotic intracellular bacterial pathogens in natural animal models, particularly brucellosis, salmonellosis, and mycobacterial diseases; 2) development of vaccines and host gene expression-based diagnostics for zoonotic and select agent caused diseases, and especially 3) development of in silico host:pathogen interactome predictive models based upon bi-directional in vivo host (bovine/murine) and Brucella spp., Mycobacterium spp.and Salmonella enterica Typhimurium interactions. We developed an in silico computational infection biology model based on actuall temporal in vivo bovine model microarray-based transcriptomic and proteomic profiling of the acute infectious process. We developed a systems biology analysis of both host and pathogen comprehensive transcriptomic and proteomic datasets derived from our in vivo biological model. We computationally fused the datasets based on actual Salmonella, Brucella and Mycobacterium data and computationally predicted bovine host structural proteins to identify maximum likelihoods of host and pathogen protein:protein interactions as the basis for our preliminary in silico interactome model to predict mechanistic genes and linked perturbed cellular pathways.",Senior Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n75fee121
Lisa,Campbell,Emerita Professor,My research focuses on phytoplankton population dynamics; harmful algal blooms and mechanisms of bloom formation; transcriptomics and metabolomics of marine dinoflagellates; ocean observing systems; and flow cytometry and imaging-in-flow cytometry.,Professor||Professor,Oceanography||Biology,https://scholars.library.tamu.edu/vivo/display/n7a7d6659
Fuller,Bazer,Distinguished Professor,"Dr. Bazer's research in reproductive biology focuses on uterine biology and pregnancy, particularly pregnancy recognition signaling from the conceptus to the maternal uterus by interferon tau and estrogen from ruminant and pig conceptuses, respectively. The roles of uterine secretions as transport proteins, regulatory molecules, growth factors and enzymes and endocrine regulation of their secretion is another major research interest. The endocrinology of pregnancy, especially the roles of lactogenic and growth hormones in fetal-placental development and uterine functions are being studied. The mechanism(s) of action and potential therapeutic value of conceptus interferons and uterine-derived hematopoietic growth factors are areas of research with both pigs and sheep as models for human disease.",Distinguished Professor,Animal Science,https://scholars.library.tamu.edu/vivo/display/n7ad91d50
Ambika,Chandra,Associate Professor,"My primary responsibility and research interest is breeding (applied and molecular) and cultivar development of warm- and cool-season turfgrass species for use in home lawns, athletic fields and golf courses. This involves adopting holistic systems approach towards cultivar development, marketing and commercialization through industry collaborations; working interactively in the interdisciplinary areas of turfgrass science including turfgrass genomics, physiology, entomology, pathology, soils and socio-economics; developing high-throughput greenhouse/growth chamber phenotyping procedures to efficiently evaluate large breeding (and mapping) populations for important traits of interest including a wide range of biotic and abiotic stress tolerances. My interests also include graduate student education and training of tomorrow's plant breeders and turfgrass professionals capable of leading a successful career in academia and/or the turfgrass industry.",Associate Professor||Associate Professor||Associate Professor,Soil and Crop Sciences||Dallas Research and Extension Center||Texas A&M AgriLife Research,https://scholars.library.tamu.edu/vivo/display/n7be9df6a
Patricia,Klein,Professor,"Dr. Klein's research focuses on developing the genomic tools and resources in crops to enable map base cloning of economically important genes, and to understand the underlying mechanisms that plants use to withstand biotic and abiotic stress. Dr. Klein conducts genetic studies on several plant species including sorghum, rose, and pecan. In 2012, Dr. Klein was awarded the College of Agriculture and Life Sciences Dean's Outstanding Achievement Award for excellence as a member of the Sorghum Bioenergy Breeding and Genomics Interdisciplinary Research Team.",Executive Associate Dean||Professor,College of Agriculture and Life Sciences||Horticultural Sciences,https://scholars.library.tamu.edu/vivo/display/n83864ec9
James,Cai,Professor,"Dr. Cai's research lies at the interface of single-cell biology, computational statistics, and data science. Current research focuses on using machine learning, network science and quantum computing to better understand the diverse behaviors of cells. Dr. Cai's group develops novel algorithms and analytical frameworks to study single-cell omics data from various types of cells, and the genetic basis of phenotypic variability to identify genetic variants that modulate complex phenotypic traits and susceptibility of genetic disorders.",Professor||Professor||Faculty,Veterinary Integrative Biosciences||Center for Statistical Bioinformatics||Electrical and Computer Engineering,https://scholars.library.tamu.edu/vivo/display/n8d287cea
David,Threadgill,Professor,"Our laboratory uses the mouse as an experimental genetic model to investigate factors that contribute to inter-individual differences in health and disease. Ourcurrent research activities include the identification and functional characterization of alleles contributing to cancer susceptibility, the function of theErbbgenefamily in development and disease, and the role of genetic variation in response to environmental stimuli. To support these investigations, we also aredeveloping new genetic tools to support mammalian systems genetic approaches to phenotypes with complex genetic and environmental etiologies.",Director||Professor||Professor||Professor,Cell Biology and Genetics||Institute of Genome Sciences and Society||Biochemistry and Biophysics||Nutrition,https://scholars.library.tamu.edu/vivo/display/n8ee0b54f
Charles,Kenerley,Professor,The long-term goal of my research program is to understand the interactions of Trichoderma species with pathogenic fungi as well as plant hosts to promote crop protection.,Professor,Plant Pathology and Microbiology,https://scholars.library.tamu.edu/vivo/display/n8f925111
James,Sacchettini,Professor,"My lab uses X-ray crystallography to better understand the relationship between proteins and ligands. Tiny differences in the structure of a molecule can radically change the interaction between a protein and ligand and we are only begining to understand how many factors play a role in this interaction. By manipulating the individual components of a compound it is possible to create a chemical that binds to the protein better than the natural substrate, and prevent the natural reaction from occurring. This is the basis for rational drug design. Our efforts have lead us to collaborations with other labs and scientists in many disciplines as our approach to directed compound design has applications not only in basic research but also in pesticide development, health research and clinical research.",Professor,Biochemistry and Biophysics,https://scholars.library.tamu.edu/vivo/display/n90385563
Aaron,Tarone,Professor,"The Tarone laboratory is interested in factors that lead to local adaptations of fly development times and body sizes. These traits are influenced by numerous genetic and environmental factors. They are also ecologically important life history traits for any organism and are frequently found to be under differential selection across populations of numerous fly species. Accordingly, there are many applied and theoretical reasons for dissecting the causes of variation in these phenotypes in flies that influence human activities.",Professor,Entomology,https://scholars.library.tamu.edu/vivo/display/nae6767b7
Amit,Dhingra,Professor and Department Head,,Professor and Department Head,College of Agriculture and Life Sciences,https://scholars.library.tamu.edu/vivo/display/ncefd1f49
Zachary,Adelman,Professor,,Associate Professor,Entomology,https://scholars.library.tamu.edu/vivo/display/ndc81a8e5
Cecilia,Tamborindeguy,Professor,"Our laboratory studies transmission of plant pathogens by insects. Research is aimed at understanding ecological and molecular aspects of plant-insect-pathogen interactions. We use Zebra Chip (ZC),an emergent disease affecting solanaceous plants, as model system. The causative agent, ""Candidatus Liberibacter solanacearum"", is an alpha-proteobacterium vectored y the potato/tomato psyllid Bactericera cockerelli. We currently use genetic and biochemical approaches to investigate different aspects of pathogen transmission and the biology of the vector insect.",Professor,Entomology,https://scholars.library.tamu.edu/vivo/display/ne6e645ee
Albert,Mulenga,"Professor and Interim head, Veterinary Pathobiology","For generations ticks and tick borne diseases have had significant impact of animal health and livestock productivity around the world. In public health the effect of ticks and tick borne diseases is also tremendous. Since the 1980s when the causative agent of Lyme disease was described, numerous human tick borne diseases have been reported. In absence of effective vaccines against major tick borne diseases, prevention of animal and human tick borne disease infections relies on the use chemicals (acaricides) to kill ticks. Although acaricide based tick control methods are effective in the short-term, they do not offer a permanent solution because of serious limitations such as ticks developing resistance and contamination of the environment and the food chain. Immunization of animals against is a validated alternative tick control method. The attraction is that tick vaccines will be effective against both acaricide resistant and susceptible tick populations. The major limiting factor is the availability of effective tick vaccine targets. The tick cannot cause damage to host or transmit disease agents without successful feeding. Thus, our plan is to understand molecular mechanisms of how ticks accomplish feeding. In this way we will find targets that will be used for development of effective tick vaccines. We are currently studying the feeding physiology of the blacklegged tick (Ixodes scapularis) and the Lone Star tick (Amblyomma americanum). According to the US Centers for Disease Control, these two medically important tick species transmit a combined nine of the 14 human tick borne disease agents in the United States. Major work is on discovery and characterization of proteins that the Lone Star and the Blacklegged tick into animals every 24h through out feeding. The area of particular emphasis is to understanding roles of serine protease inhibitors (serpins) the blacklegged tick and the Lone Star tick inject into animals during feeding. We have identified serpins",Professor and associate head||Professor & Interim Head,School of Veterinary Medicine and Biomedical Sciences||Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/ne8f0c620
Jeffery,Tomberlin,Professor,"My areas of interest and expertise are the ecology and biology of flies associated with decomposing matter. Primarily, my research falls into two categories, 1) determine proper methods for suppressing fly populations associated with animal waste on confined animal facilities, 2) understanding the biology of insects that colonize human remains in order to assist law enforcement personnel in estimating the time of colonization of a corpse in order to provide a minimum postmortem interval.",Associate Professor,Entomology,https://scholars.library.tamu.edu/vivo/display/ne8fb4d5b
Ryland,Young,Professor,"Most bacterial viruses (phages) cause lysis of their host cell to release the progeny virions. Large phages elaborate an enzyme (""endolysin"") to degrade the cell wall and also a small membrane protein (""holin""). The holin accumulates in the membrane and then, at a precisely scheduled time, suddenly forms a hole to allow release of endolysin through the cytoplasmic membrane to gain access to the wall. We use molecular genetics and biochemistry to study how this small protein is able to act as a molecular ""clock"" and punch holes in membranes. Small phages make single proteins which cause host lysis in a different way. This strategy is to target the host cell wall synthesis machinery; that is, the virus makes a ""protein antibiotic"" that causes lysis in the same way as antibiotics like penicillin by inhibiting an enzyme in the multi-step pathway of murein biosynthesis. Thus, when the infected cell tries to divide, it blows up, or lyses, because it can't make the new cell wall between the daughter cells. Remarkably, each of three different, small phages blocks a different step in the pathway. These small lysis proteins are models for a completely new class of antibacterial antibiotics. Also, the E. coli SlyD protein is required for this mode of lysis in one case. SlyD is a member of an ubiquitous family of proteins related to human ""immunophilins,"" the targets of immune-suppression drugs. We study SlyD to learn about the role of this class of proteins in biology.",Professor,Biochemistry and Biophysics,https://scholars.library.tamu.edu/vivo/display/nea775348
Clare,Gill,Professor,"Dr. Gill teaches an undergraduate senior seminar course and a graduate course in applied animal genomics. Her primary research interest is in development and application of efficient molecular tools for comparative genomics. She is also the principal investigator of the McGregor Genomics Project, which is a collaborative effort to map genes for production efficiency in cattle.",Professor||Executive Associate Dean and Associate Dean for Research,College of Agriculture and Life Sciences||Animal Science,https://scholars.library.tamu.edu/vivo/display/nf0375f36
Noah,Cohen,Distinguished Professor and Associate Department Head,,Distinguished Professor and Associate Department Head,Large Animal Clinical Sciences,https://scholars.library.tamu.edu/vivo/display/nf22c59c1
Matthew,Sachs,Professor,"Understanding the mechanisms by which upstream open reading frames (uORFs) in mRNA transcripts control gene expression is currently the major focus of my laboratory. A substantial component of this work is focused on the uORF-encoded fungal arginine attenuator peptide (AAP). The major goal of this work is to understand the mechanism by which a nascent peptide encoded by this uORF controls the movement of ribosomes on mRNA and regulates gene expression. Control mechanisms mediated by uORFs and nascent peptides exist in mammals, fungi, plants, viruses, and bacteria, but relatively little is known of the molecular details of such control. The AAP is encoded by a uORF in the 5?-leader regions of mRNAs specifying the first enzyme in fungal arginine (Arg) biosynthesis. Synthesis of the AAP rapidly reduces gene expression in response to Arg. AAP-mediated regulation is observed in vivo in both Neurospora crassa and Saccharomyces cerevisiae and in vitro, using fungal, plant and animal extracts. The nascent AAP causes the ribosome to stall when the concentration of Arg is high.",Professor,Biology,https://scholars.library.tamu.edu/vivo/display/nfe74574c
Adela,Oliva Chavez,Assistant Professor,"My lab focuses on the molecular host-pathogen and vector-pathogen interactions. Vector-borne pathogens have evolved in close relationship with their vectors and hosts for thousands of years. Thus, they have acquired mechanisms to manipulate the cellular machinery of both, the vector and the mammalian host. I am interested in how vector-borne pathogens influence host and vector cellular responses, such as immune responses, cellular trafficking, and vesicle secretion.
We are also interested in how tick-borne pathogens sense environmental changes when moving between the vector and the mammalian host. Members of the Anaplasmataceae change their protein profile during their development within the mammalian host when compared to the vector. We want to use these bacteria as a model to understand what clues intracellular bacteria use to detect changes in environment. This knowledge could lead to development of interventions to disrupt the life cycle of tick-borne pathogens, and prevent disease in humans and animals.",Assistant Professor,Entomology,https://scholars.library.tamu.edu/vivo/display/nfead5f34