First name,Last name,Preferred title,Overview,Position,Department,Individual
James,Samuel,Regents Professor and Head,"Our laboratory works with the obligate intracellular bacterial pathogen, Coxiella burnetii, the etiologic agent of Q fever and a category B biothreat agent. The long-term goal of this research is to understand the molecular pathogenic mechanisms involved in the host-pathogen interaction. To accomplish this broad goal, project in the lab are designed to test the molecular mechanisms employed by both the host and pathogen. Current pathogen studies include 1) broad survey of proteins secreted via a type 4 secretion system (T4SS) followed by determination of essentiality of each substrate for virulence and detailed analysis of mechanism of host modulation 2) survey of essential virulence loci identified by specific mutant screens, and 3) definition of the relative virulence of phylogenetically distinct isolate groups.",Regents Professor and Head,Microbial Pathogenesis and Immunology,https://scholars.library.tamu.edu/vivo/display/n01c3216f
Suresh,Pillai,Professor,"Dr. Pillai's research focuses on bacterial cell-to-cell signaling, the molecular ecology of pathogens in natural and man-made ecosystems and the use of novel technologies to concentrate, detect, and decontaminate pathogens. His research on molecular microbial ecology and cell-cell signaling is targeted at understanding the complex and hitherto poorly understood relationship between microbial communities and human behavior. His research is aimed at understanding the role that the GI tract-associated microbiome has on human behavior.",Professor,Poultry Science,https://scholars.library.tamu.edu/vivo/display/n3009b050
Guan,Zhu,Professor,"Our laboratory conducts translational research with an ultimate goal to discover new anti-parasitic therapeutics by targeting metabolic enzymes and other molecules critical or essential to the parasite infection, survival and development, such as those involved in the lipid and energy metabolisms and interacting with host cells in Cryptosporidium and other protozoan parasites. Other research areas include functional genomics and molecular evolution of apicomplexan parasites, and parasitic diseases important to the conservation of wild animals.",Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n6d62f33b
Leslie,Adams,Senior Professor,"My research is focused on the: 1) investigation of the comparative molecular pathogenesis of zoonotic intracellular bacterial pathogens in natural animal models, particularly brucellosis, salmonellosis, and mycobacterial diseases; 2) development of vaccines and host gene expression-based diagnostics for zoonotic and select agent caused diseases, and especially 3) development of in silico host:pathogen interactome predictive models based upon bi-directional in vivo host (bovine/murine) and Brucella spp., Mycobacterium spp.and Salmonella enterica Typhimurium interactions. We developed an in silico computational infection biology model based on actuall temporal in vivo bovine model microarray-based transcriptomic and proteomic profiling of the acute infectious process. We developed a systems biology analysis of both host and pathogen comprehensive transcriptomic and proteomic datasets derived from our in vivo biological model. We computationally fused the datasets based on actual Salmonella, Brucella and Mycobacterium data and computationally predicted bovine host structural proteins to identify maximum likelihoods of host and pathogen protein:protein interactions as the basis for our preliminary in silico interactome model to predict mechanistic genes and linked perturbed cellular pathways.",Senior Professor,Veterinary Pathobiology,https://scholars.library.tamu.edu/vivo/display/n75fee121
Bhimanagouda,Patil,"Leonard Pike Inagural University Professor and Interim Head, Food Science and Technology","Dr. Bhimu Patil is internationally recognized for his expertise and research on 'foods for health' and his related educational programs. His systems-wide farm-to-table approaches include examining pre- and postharvest effects on bioactive compounds, isolating and characterizing these compounds from different fruits and vegetables, and understanding their roles in human health. Moreover, he has a strong working relationship with produce industry stakeholders. Dr. Patil has a distinguished record of achievements in education, including leading the development of three unique courses linking agriculture, human health, and sustainability. Texas A&M University has been a leader in this area, due in part to Dr. Patil's seminal contributions in these first-of-their-kind multidisciplinary courses. Dr. Patil's contributions to education are no less distinguished. He developed and taught three unique, innovative multi-state and multi-disciplinary courses, ""Phytochemicals in Fruits and Vegetables to Improve Human Health"", ""Science of Foods for Health"" and ""The Nexus of Food & Nutritional Security, Hunger, and Sustainability"".",Professor||Professor,Nutrition||Horticultural Sciences,https://scholars.library.tamu.edu/vivo/display/n9a0e203e
Deborah,Siegele,Associate Professor,"Phenotypes are observable characteristics of an organism that result from the expression of a particular genotype in a particular environment. Examples of phenotypic traits in microbes are motility, sporulation, ability to perform anaerobic respiration, and resistance/sensitivity to an antibiotic.
Until recently, phenotypic information has been captured as free text descriptions in research papers. Ambiguities in natural language confound attempts to retrieve information across sources. For example, ""serotype"" and ""serovar"" both refer to the same phenotype, but a simple text-based query with either word alone would miss the other. Or a single term, such as ""sporulation"" is used to refer to multiple, distinct processes in different organisms. Issues such as these hamper the ability to integrate different phenotypic data sets for the same organism or to use phenotypic information in one organism to predict possible phenotypes in another organism. Ideally, phenotype information should be stored in a consistent, computable format for ease of data integration and mining.
Controlled vocabularies are used to provide both consistent terminology and a structured data format for the capture of biological information. Ontologies are controlled vocabularies of defined terms with unique identifiers and precise relationships to each other. There are phenotype ontologies available for many eukaryotic organisms, including fungi. However, when the OMP project was initiated, none of the existing ontologies was appropriate to comprehensively capture phenotypes for Bacteria or Archaea or to enable comparisons across microbial taxa.
The Siegele lab and our collaborators at TAMU and the Univ. of Maryland (IGS) are developing a formal Ontology of Microbial Phenotypes (OMP). Our lab is focused on term development and annotating microbial phenotypes. OMP can be accessed at microbialphenotypes.org. Releases of OMP are available at github.com/microbialphenotypes.",Associate Professor,Biology,https://scholars.library.tamu.edu/vivo/display/ne333d587
Jeffrey,Cirillo,Professor,"Our laboratory is interested in the pathogenesis of bacterial lung infections particularly tuberculosis and Legionnaires' disease. We are examining the virulence mechanisms of bacteria using cellular, molecular and genetic techniques. Our primary research goal is to obtain a better understanding of the roles of the pathogen and host in disease. These studies should contribute to our understanding of host-pathogen interactions at the molecular and cellular level that can be used for prevention, treatment and diagnosis. We hope that through a better understanding of the mechanisms by which these organisms cause disease we can prevent some, if not all, of these infections in the future.",Professor||Director,Microbial Pathogenesis and Immunology||Center for Airborne Pathogen Research and Tuberculosis Imaging,https://scholars.library.tamu.edu/vivo/display/ne8bc1122
Jan,Suchodolski,Professor,"Our research is focused on gastrointestinal function testing, gastrointestinal pathogens, and intestinal microbial ecology with an emphasis on probiotics and prebiotics and how intestinal pathogens lead to disturbances in the intestinal microbiome of companion animals.",Associate Director of GI Lab||Professor,Small Animal Clinical Sciences||Small Animal Clinical Sciences,https://scholars.library.tamu.edu/vivo/display/nf0f36949
Joerg,Steiner,Professor,"My veterinary career has mainly focused on two aspects, patient care and clinically-relevant research. As a veterinary clinician and clinical teacher I am exposed to a wide variety of canine and feline patients with complex medical conditions. These patients serve as a constant source of new clinical problems that beckon to be studied further. Sometimes these studies are merely clinical, relating to characterization of an uncommon condition, diagnosis of a difficult-to-diagnose condition, or a novel therapeutic approach to a well-described condition. In other instances studies that are spurred by clinical cases are more basic-science based, utilizing state-of-the-art technologies to further evaluate the etiology or pathogenesis of a disease. In some instances, studies may provide comparative aspects related to experimental animals, such as rodents or primates, or even to human patients with similar conditions. I believe that my role as a mentor can be unique in that I can help graduate students bridge the gap between science and clinical aspects and between veterinary and human medical interests - giving us further opportunities to advance the concept of one-health.","Professor||Director, Gastrointestinal Laboratory",School of Veterinary Medicine and Biomedical Sciences||Small Animal Clinical Sciences,https://scholars.library.tamu.edu/vivo/display/nf4de66a0